dnanexus-integration

仓库创建 2025年10月20日最近提交 5 小时前SkillHot 收录 20 天前

▸ 精选理由

便于构建与部署云端基因组流水线，适合平台化开发者。

▸ 风险提示

需 DNAnexus 账号与可能产生付费云资源费用

这个 Skill 做什么

与 DNAnexus 平台集成，管理数据对象并运行基因组工作流。

在 DNAnexus 上构建并运行可复现的基因组工作流，操作 dx CLI、dxpy、apps/applets、native workflows 和 Nextflow，管理文件、项目、作业与成本监控。适合需要自动化数据传输、开发 dxapp.json、监控执行与重试策略的场景。能把平台细节和权限跑通，减少反复试错。

▸ 展开 SKILL.md 英文原文

Build and operate reproducible genomics workloads on DNAnexus with the dx CLI, dxpy, apps/applets, native workflows, dxCompiler, and Nextflow. Use for DNAnexus data transfers, dxapp.json development, execution monitoring, workflow import, and project automation.

垂直行业云基因组学dxpy工作流管理通用

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帮我安装这个 skill：https://raw.githubusercontent.com/K-Dense-AI/scientific-agent-skills/main/skills/dnanexus-integration/SKILL.md

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SKILL.MD 节选查看完整文件 ↗

# DNAnexus Integration

## Purpose

Use this skill to build, run, and operate DNAnexus workloads without guessing
at platform semantics. It covers:

- `dx` CLI and `dxpy` automation
- Files, records, folders, projects, and metadata
- Apps and applets defined by `dxapp.json`
- Jobs, workflow analyses, retries, monitoring, and cost controls
- Native workflows, WDL/CWL through dxCompiler, and Nextflow imports

The documented baseline was verified on **2026-07-23** against
`dxpy==0.410.0`, dxCompiler 2.17.0, and the 2026 DNAnexus documentation.
Consult `references/sources.md` and current release notes when behavior may
have changed.

## Operating Contract

DNAnexus operations can expose regulate

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